gabriel / musehub public
docs BREAKING phase-03 dev #35 / 100
AI Agent gabriel · 12 days ago · May 27, 2026 · Diff

docs(phase-03): rewrite Domain Protocol — AddressedMergePlugin, five algebras, what-you-get-free sections

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+ .cursorrules .cursorrules
+ .env.example .example
+ .museignore .museignore
+ .vscode/settings.json .json
+ .windsurfrules .windsurfrules
+ AGENTS.md .md
+ CLAUDE.md .md
+ Dockerfile
+ LICENSE
+ Makefile
+ README.md .md
+ alembic.ini .ini
+ alembic/env.py .py
+ alembic/script.py.mako .mako
+ alembic/versions/0001_consolidated_schema.py .py
+ alembic/versions/0002_add_bridge_mirrors.py .py
+ alembic/versions/0003_normalized_symbol_intel_tables.py .py
+ alembic/versions/0004_phase1_intel_tables.py .py
+ alembic/versions/0005_gravity_columns.py .py
+ alembic/versions/0006_rename_gravity_columns.py .py
+ alembic/versions/0007_dead_dismissed.py .py
+ alembic/versions/0008_stable_last_changed_commit.py .py
+ alembic/versions/0009_stable_symbol_kind.py .py
+ alembic/versions/0010_entangle_fields.py .py
+ alembic/versions/0011_coupling_indexes.py .py
+ alembic/versions/0012_velocity_extended_columns.py .py
+ alembic/versions/0013_type_return_annotation.py .py
+ alembic/versions/0014_languages_kinds_json.py .py
+ alembic/versions/0015_codemap_tables.py .py
+ alembic/versions/0016_refactor_events_commit_message.py .py
+ alembic/versions/0017_breakage_tables.py .py
+ alembic/versions/0018_raw_op_payload.py .py
+ alembic/versions/0019_commit_provenance_columns.py .py
+ alembic/versions/0020_promote_commit_meta_columns.py .py
+ alembic/versions/0021_structured_delta_column.py .py
+ alembic/versions/0022_auth_challenge_nonce_pk.py .py
+ alembic/versions/0023_coord_reservation_composite_pk.py .py
+ alembic/versions/0024_json_to_jsonb_and_array.py .py
+ alembic/versions/0025_server_defaults_booleans_and_enums.py .py
+ alembic/versions/0026_drop_musehub_issue_labels.py .py
+ alembic/versions/0027_rename_record_uuid_to_record_id.py .py
+ alembic/versions/0028_fix_musehub_commits_array_cols.py .py
+ alembic/versions/0029_musehub_commits_created_at_server_default.py .py
+ alembic/versions/0030_widen_id_columns_to_128.py .py
+ alembic/versions/0031_symbol_vitals_coupling_history_cols.py .py
+ alembic/versions/0032_symbol_vitals_coupling_count.py .py
+ alembic/versions/0033_symbol_intel_blast_index.py .py
+ alembic/versions/0034_file_last_commits_table.py .py
+ alembic/versions/0035_schema_repair.py .py
+ alembic/versions/0036_schema_repair_sql.py .py
+ alembic/versions/0037_widen_id_columns_repair.py .py
+ alembic/versions/0038_type_repair_json_to_jsonb_and_arrays.py .py
+ alembic/versions/0039_fix_schema_drift_indexes_tag_id.py .py
+ alembic/versions/0040_repair_schema_drift_idempotent.py .py
+ alembic/versions/0041_widen_symbol_intel_op_column.py .py
+ alembic/versions/0042_add_is_admin_column_identity_type_check.py .py
+ alembic/versions/0043_attestation_claim_types_and_scope.py .py
+ alembic/versions/0044_proposal_list_query_indexes.py .py
+ alembic/versions/0045_proposal_type_and_merge_strategy.py .py
+ alembic/versions/0046_proposal_domain_summaries_and_agent_meta.py .py
+ alembic/versions/0047_proposal_dependency_and_simulation_tables.py .py
+ alembic/versions/0048_proposal_proposer_signature.py .py
+ alembic/versions/0049_proposal_snapshot_anchors.py .py
+ alembic/versions/0050_backfill_merge_strategy.py .py
+ alembic/versions/0051_drop_disk_path_from_musehub_objects.py .py
+ alembic/versions/0052_object_refs_object_id_index.py .py
+ alembic/versions/0053_snapshot_manifest_blob_nullable.py .py
+ alembic/versions/0056_drop_muse_objects_muse_tags.py .py
+ alembic/versions/0057_branch_repo_name_index.py .py
+ alembic/versions/0058_commits_snapshots_global.py .py
+ alembic/versions/0059_pack_index.py .py
+ alembic/versions/0060_commit_graph.py .py
+ alembic/versions/0061_commit_graph_global.py .py
+ alembic/versions/0062_pack_index_global.py .py
+ alembic/versions/0063_mpack_index_full_coverage.py .py
+ alembic/versions/0064_drop_stream_rejections.py .py
+ alembic/versions/0065_rename_pack_index_to_mpack_index.py .py
+ alembic/versions/0066_snapshot_delta_columns.py .py
+ alembic/versions/20260511_2005_b9f8e7d6ec09_0054_dmca_hold_quarantine_abuse_tables.py .py
+ alembic/versions/20260511_2009_49036ecac3d6_0055_dmca_hold_missing_tables.py .py
+ deploy/aws-provision-staging.sh .sh
+ deploy/aws-provision.sh .sh
+ deploy/backfill_content_ids_from_snapshots.py .py
+ deploy/backfill_genesis_ops.py .py
+ deploy/backfill_history_from_snapshots.py .py
+ deploy/backfill_intel_jobs.py .py
+ deploy/backfill_move_to_address.py .py
+ deploy/backfill_raw_ops_from_commits.py .py
+ deploy/backfill_structured_delta.py .py
+ deploy/backup.sh .sh
+ deploy/bootstrap-instance.sh .sh
+ deploy/cloudwatch-alerts.sh .sh
+ deploy/count_compressed.py .py
+ deploy/decompress_objects.py .py
+ deploy/deploy.sh .sh
+ deploy/load-tests/locustfile.py .py
+ deploy/migrate-test.sh .sh
+ deploy/migrate_r2_keys.py .py
+ deploy/nginx-cf.conf .conf
+ deploy/publish_muse_release.sh .sh
+ deploy/push.sh .sh
+ deploy/repair_objects.py .py
+ deploy/secrets.sh .sh
+ deploy/seed.sh .sh
+ deploy/set-active-slot.sh .sh
+ deploy/setup-ec2-staging.sh .sh
+ deploy/setup-ec2.sh .sh
+ deploy/smoke_muse.sh .sh
+ docker-compose.override.yml .yml
+ docker-compose.yml .yml
+ docs/README.md .md
+ docs/db-management.md .md
+ docs/db-query-runbook.md .md
+ docs/deploy.md .md
+ docs/guides/frontend-assets.md .md
+ docs/guides/local-dev-setup.md .md
+ docs/guides/spectral-theme.md .md
+ docs/guides/threat-model.md .md
+ docs/infrastructure.md .md
+ docs/legal/dmca.md .md
+ docs/legal/license-audit.md .md
+ docs/legal/privacy-policy.md .md
+ docs/legal/terms-of-service.md .md
+ docs/on-call-runbook.md .md
+ docs/post-deploy-smoke.md .md
+ docs/pre-launch-checklist.md .md
+ docs/reference/mcp.md .md
+ docs/reference/mist-domain.md .md
+ docs/reference/msign.md .md
+ docs/reference/type-contracts.md .md
+ docs/roadmaps/issues-reimagined.md .md
+ docs/roadmaps/musehub-taxonomy.md .md
+ docs/secret-rotation-runbook.md .md
+ docs/ssl.md .md
+ docs/test-coverage-checklist.md .md
+ entrypoint.sh .sh
+ musehub.db .db
+ musehub/__init__.py .py
+ musehub/api/__init__.py .py
+ musehub/api/routes/__init__.py .py
+ musehub/api/routes/api/__init__.py .py
+ musehub/api/routes/api/admin.py .py
+ musehub/api/routes/api/auth.py .py
+ musehub/api/routes/api/caps.py .py
+ musehub/api/routes/api/identities.py .py
+ musehub/api/routes/api/orgs.py .py
+ musehub/api/routes/api/profiles.py .py
+ musehub/api/routes/api/search.py .py
+ musehub/api/routes/api/snapshots.py .py
+ musehub/api/routes/coord.py .py
+ musehub/api/routes/mcp.py .py
+ musehub/api/routes/musehub/__init__.py .py
+ musehub/api/routes/musehub/_nav_ctx.py .py
+ musehub/api/routes/musehub/_templates.py .py
+ musehub/api/routes/musehub/_ui_helpers.py .py
+ musehub/api/routes/musehub/blame.py .py
+ musehub/api/routes/musehub/bridges.py .py
+ musehub/api/routes/musehub/collaborators.py .py
+ musehub/api/routes/musehub/discover.py .py
+ musehub/api/routes/musehub/domains.py .py
+ musehub/api/routes/musehub/htmx_helpers.py .py
+ musehub/api/routes/musehub/install.py .py
+ musehub/api/routes/musehub/issues.py .py
+ musehub/api/routes/musehub/jinja2_filters.py .py
+ musehub/api/routes/musehub/json_alternate.py .py
+ musehub/api/routes/musehub/labels.py .py
+ musehub/api/routes/musehub/mists.py .py
+ musehub/api/routes/musehub/negotiate.py .py
+ musehub/api/routes/musehub/objects.py .py
+ musehub/api/routes/musehub/pagination.py .py
+ musehub/api/routes/musehub/proposals.py .py
+ musehub/api/routes/musehub/releases.py .py
+ musehub/api/routes/musehub/repos.py .py
+ musehub/api/routes/musehub/search.py .py
+ musehub/api/routes/musehub/sitemap.py .py
+ musehub/api/routes/musehub/social.py .py
+ musehub/api/routes/musehub/topics.py .py
+ musehub/api/routes/musehub/ui.py .py
+ musehub/api/routes/musehub/ui_agents.py .py
+ musehub/api/routes/musehub/ui_avatars.py .py
+ musehub/api/routes/musehub/ui_blame.py .py
+ musehub/api/routes/musehub/ui_blob.py .py
+ musehub/api/routes/musehub/ui_commits.py .py
+ musehub/api/routes/musehub/ui_docs.py .py
+ musehub/api/routes/musehub/ui_domains.py .py
+ musehub/api/routes/musehub/ui_intel.py .py
+ musehub/api/routes/musehub/ui_issues.py .py
+ musehub/api/routes/musehub/ui_jsonld.py .py
+ musehub/api/routes/musehub/ui_legal.py .py
+ musehub/api/routes/musehub/ui_mists.py .py
+ musehub/api/routes/musehub/ui_new_repo.py .py
+ musehub/api/routes/musehub/ui_proposals.py .py
+ musehub/api/routes/musehub/ui_releases.py .py
+ musehub/api/routes/musehub/ui_repo.py .py
+ musehub/api/routes/musehub/ui_repo_settings.py .py
+ musehub/api/routes/musehub/ui_sessions.py .py
+ musehub/api/routes/musehub/ui_symbols.py .py
+ musehub/api/routes/musehub/ui_topics.py .py
+ musehub/api/routes/musehub/ui_tree.py .py
+ musehub/api/routes/musehub/ui_user_profile.py .py
+ musehub/api/routes/musehub/ui_view.py .py
+ musehub/api/routes/musehub/users.py .py
+ musehub/api/routes/musehub/webhooks.py .py
+ musehub/api/routes/protocol.py .py
+ musehub/api/routes/wire.py .py
+ musehub/api/validation.py .py
+ musehub/auth/__init__.py .py
+ musehub/auth/dependencies.py .py
+ musehub/auth/failure_limiter.py .py
+ musehub/auth/request_signing.py .py
+ musehub/config.py .py
+ musehub/core/__init__.py .py
+ musehub/core/genesis.py .py
+ musehub/crypto/__init__.py .py
+ musehub/crypto/keys.py .py
+ musehub/db/__init__.py .py
+ musehub/db/coord_models.py .py
+ musehub/db/database.py .py
+ musehub/db/muse_cli_models.py .py
+ musehub/db/musehub_abuse_models.py .py
+ musehub/db/musehub_auth_models.py .py
+ musehub/db/musehub_collaborator_models.py .py
+ musehub/db/musehub_domain_models.py .py
+ musehub/db/musehub_identity_models.py .py
+ musehub/db/musehub_intel_models.py .py
+ musehub/db/musehub_jobs_models.py .py
+ musehub/db/musehub_label_models.py .py
+ musehub/db/musehub_release_models.py .py
+ musehub/db/musehub_repo_models.py .py
+ musehub/db/musehub_social_models.py .py
+ musehub/db/musehub_webhook_models.py .py
+ musehub/db/schema_check.py .py
+ musehub/db/schema_gate.py .py
+ musehub/db/utils.py .py
+ musehub/debug/__init__.py .py
+ musehub/debug/memory.py .py
+ musehub/graph/__init__.py .py
+ musehub/graph/cycle.py .py
+ musehub/graph/dag.py .py
+ musehub/graph/depth.py .py
+ musehub/graph/push_validator.py .py
+ musehub/graph/quorum.py .py
+ musehub/graph/service.py .py
+ musehub/graph/walk.py .py
+ musehub/logging_config.py .py
+ musehub/main.py .py
+ musehub/maintenance/__init__.py .py
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+ musehub/mcp/context.py .py
+ musehub/mcp/dispatcher.py .py
+ musehub/mcp/elicitation.py .py
+ musehub/mcp/prompts.py .py
+ musehub/mcp/resources.py .py
+ musehub/mcp/session.py .py
+ musehub/mcp/sse.py .py
+ musehub/mcp/stdio_server.py .py
+ musehub/mcp/tools/__init__.py .py
+ musehub/mcp/tools/musehub.py .py
+ musehub/mcp/write_tools/__init__.py .py
+ musehub/mcp/write_tools/collaborators.py .py
+ musehub/mcp/write_tools/elicitation_tools.py .py
+ musehub/mcp/write_tools/issues.py .py
+ musehub/mcp/write_tools/labels.py .py
+ musehub/mcp/write_tools/mists.py .py
+ musehub/mcp/write_tools/proposals.py .py
+ musehub/mcp/write_tools/releases.py .py
+ musehub/mcp/write_tools/repos.py .py
+ musehub/mcp/write_tools/webhooks.py .py
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+ musehub/middleware/access_log.py .py
+ musehub/middleware/bot_throttle.py .py
+ musehub/middleware/content_size.py .py
+ musehub/middleware/static_cache.py .py
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+ musehub/models/base.py .py
+ musehub/models/bridge.py .py
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+ musehub/models/musehub.py .py
+ musehub/models/musehub_auth.py .py
+ musehub/models/musehub_context.py .py
+ musehub/models/wire.py .py
+ musehub/muse_cli/__init__.py .py
+ musehub/muse_cli/db.py .py
+ musehub/muse_cli/models.py .py
+ musehub/muse_cli/snapshot.py .py
+ musehub/proposals/__init__.py .py
+ musehub/proposals/signing.py .py
+ musehub/protocol/__init__.py .py
+ musehub/protocol/events.py .py
+ musehub/protocol/responses.py .py
+ musehub/protocol/version.py .py
+ musehub/py.typed .typed
+ musehub/rate_limits.py .py
+ musehub/security/__init__.py .py
+ musehub/security/magic_bytes.py .py
+ musehub/security/ssrf.py .py
+ musehub/services/__init__.py .py
+ musehub/services/bridge_service.py .py
+ musehub/services/derived_agent_provisioner.py .py
+ musehub/services/file_last_commits.py .py
+ musehub/services/musehub_attestations.py .py
+ musehub/services/musehub_auth.py .py
+ musehub/services/musehub_context.py .py
+ musehub/services/musehub_coord.py .py
+ musehub/services/musehub_coord_server.py .py
+ musehub/services/musehub_credits.py .py
+ musehub/services/musehub_cross_repo.py .py
+ musehub/services/musehub_discover.py .py
+ musehub/services/musehub_divergence.py .py
+ musehub/services/musehub_domains.py .py
+ musehub/services/musehub_gc.py .py
+ musehub/services/musehub_governance.py .py
+ musehub/services/musehub_intel.py .py
+ musehub/services/musehub_intel_providers.py .py
+ musehub/services/musehub_issues.py .py
+ musehub/services/musehub_jobs.py .py
+ musehub/services/musehub_mcp_executor.py .py
+ musehub/services/musehub_mist_indexer.py .py
+ musehub/services/musehub_mist_push_validator.py .py
+ musehub/services/musehub_mists.py .py
+ musehub/services/musehub_mpay.py .py
+ musehub/services/musehub_orgs.py .py
+ musehub/services/musehub_profile.py .py
+ musehub/services/musehub_proposal_gate.py .py
+ musehub/services/musehub_proposal_risk.py .py
+ musehub/services/musehub_proposals.py .py
+ musehub/services/musehub_release_packager.py .py
+ musehub/services/musehub_releases.py .py
+ musehub/services/musehub_repository.py .py
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+ musehub/services/musehub_social.py .py
+ musehub/services/musehub_symbol_indexer.py .py
+ musehub/services/musehub_sync.py .py
+ musehub/services/musehub_webhook_crypto.py .py
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+ musehub/services/musehub_wire_push.py .py
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+ musehub/services/musehub_wire_tags.py .py
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+ musehub/services/proposal_merge_strategies.py .py
+ musehub/services/proposal_simulation.py .py
+ musehub/services/proposal_symbol_delta.py .py
+ musehub/services/release_analysis.py .py
+ musehub/services/repo_card_enrichment.py .py
+ musehub/services/spectral_sigil.py .py
+ musehub/services/symbol_anchor.py .py
+ musehub/storage/__init__.py .py
+ musehub/storage/backends.py .py
+ musehub/storage/refs.py .py
+ musehub/templates/mcp/elicitation_callback.html .html
+ musehub/templates/mcp/elicitation_connect.html .html
+ musehub/templates/musehub/base.html .html
+ musehub/templates/musehub/fragments/branch_list_rows.html .html
+ musehub/templates/musehub/fragments/branch_rows.html .html
+ musehub/templates/musehub/fragments/collaborator_rows.html .html
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+ musehub/templates/musehub/fragments/file_tree.html .html
+ musehub/templates/musehub/fragments/global_search_results.html .html
+ musehub/templates/musehub/fragments/issue_comments.html .html
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+ musehub/templates/musehub/fragments/tag_rows.html .html
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+ musehub/templates/musehub/macros/label.html .html
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+ musehub/templates/musehub/pages/agent_profile.html .html
+ musehub/templates/musehub/pages/agents_coord.html .html
+ musehub/templates/musehub/pages/agents_coord_forecast.html .html
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+ musehub/templates/musehub/pages/docs_muse_api.html .html
+ musehub/templates/musehub/pages/docs_muse_coordination.html .html
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+ musehub/templates/musehub/pages/docs_muse_intelligence.html .html
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+ musehub/templates/musehub/pages/docs_muse_profiles.html .html
+ musehub/templates/musehub/pages/docs_muse_shelves.html .html
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+ tests/test_mist_phase6_docs_page.py .py
+ tests/test_mist_phase7_rate_limits.py .py
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+ tests/test_musehub_ui_commits_enhanced.py .py
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+ tests/test_musehub_ui_explore_ssr.py .py
+ tests/test_musehub_ui_htmx_infra.py .py
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+ tests/test_musehub_ui_issue_list_enhanced.py .py
+ tests/test_musehub_ui_jsonld.py .py
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+ tests/test_proposal_snapshot_anchors.py .py
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+ tests/test_proposal_update.py .py
+ tests/test_proposals_no_commit_meta.py .py
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+ tests/test_push_ff_check.py .py
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+ tests/test_quorum_enforcement.py .py
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+ tests/test_raw_endpoint.py .py
+ tests/test_release_analysis_no_commit_meta.py .py
+ tests/test_releases.py .py
+ tests/test_repo_card_e2e.py .py
+ tests/test_repo_card_enrichment_integration.py .py
+ tests/test_repo_card_enrichment_unit.py .py
+ tests/test_repo_card_integrity.py .py
+ tests/test_repo_card_performance.py .py
+ tests/test_repo_card_security.py .py
+ tests/test_repo_card_state.py .py
+ tests/test_repo_card_stress.py .py
+ tests/test_repository_no_commit_meta.py .py
+ tests/test_repository_service.py .py
+ tests/test_schema_check.py .py
+ tests/test_schema_parity.py .py
+ tests/test_search.py .py
+ tests/test_secrets_management.py .py
+ tests/test_security_server_audit.py .py
+ tests/test_server_default_roundtrip.py .py
+ tests/test_server_defaults.py .py
+ tests/test_sessions.py .py
+ tests/test_snapshot_symbol_indexer.py .py
+ tests/test_social_api.py .py
+ tests/test_spectral_sigil.py .py
+ tests/test_static_assets.py .py
+ tests/test_storage_backends.py .py
+ tests/test_symbol_anchor_parser.py .py
+ tests/test_symbol_detail_fast_reads.py .py
+ tests/test_symbol_detail_pagination.py .py
+ tests/test_symbol_detail_phase1.py .py
+ tests/test_symbol_indexer_no_commit_meta.py .py
+ tests/test_symbol_intelligence.py .py
+ tests/test_symbols_v2_p1_coupling_count.py .py
+ tests/test_symbols_v2_p2_route_join.py .py
+ tests/test_symbols_v2_p3_template.py .py
+ tests/test_symbols_v2_p4_intel_fields.py .py
+ tests/test_ui_agents_no_commit_meta.py .py
+ tests/test_ui_blame_no_commit_meta.py .py
+ tests/test_ui_blob_no_commit_meta.py .py
+ tests/test_ui_commits_no_commit_meta.py .py
+ tests/test_ui_proposals_no_commit_meta.py .py
+ tests/test_ui_repo_no_commit_meta.py .py
+ tests/test_ui_ssr.py .py
+ tests/test_ui_user_profile_no_commit_meta.py .py
+ tests/test_ui_view_no_commit_meta.py .py
+ tests/test_url_validation.py .py
+ tests/test_users_no_commit_meta.py .py
+ tests/test_velocity_provider.py .py
+ tests/test_walk_commit_delta_scale.py .py
+ tests/test_webhook_crypto.py .py
+ tests/test_webhooks.py .py
+ tests/test_wire_fetch_mpack.py .py
+ tests/test_wire_fetch_presign.py .py
+ tests/test_wire_fetch_step1.py .py
+ tests/test_wire_mpack_presign_step1_e2e.py .py
+ tests/test_wire_mpack_presign_step1_tiers4567.py .py
+ tests/test_wire_mpack_unpack_step3_e2e.py .py
+ tests/test_wire_mpack_unpack_step3_tiers4567.py .py
+ tests/test_wire_step3_upload.py .py
+ tests/test_wire_step4c_scale.py .py
+ tests/test_wire_tags.py .py
+ tests/test_zlib_object_decompression.py .py
+ tests/unit/__init__.py .py
+ tests/unit/conftest.py .py
+ tests/unit/test_phase2_inMemory_walk_dag.py .py
+ tests/unit/test_phase3_db_walk_dag_async.py .py
+ tests/unit/test_phase4_load_commit_walk.py .py
+ tests/unit/test_walk_dag_async.py .py
+ tools/gen_type_contracts.py .py
+ tools/smoke_push.py .py
+ tools/ts_audit.py .py
+ tools/typing_audit.py .py
+ tsconfig.json .json
+ tsconfig.node.json .json
+ vitest.config.ts .ts
+ workflows/ci.yml .yml
Older fix: read structured_delta from mpack instead of hardcoding None sha256:ccb2f9cff9b401552df07ded64d3b53f1a5afa092f8bd671c3bb421d7d72cc25 All commits Newer docs(phase-03): port Five Algebras and What-You-Get-Free visuali… sha256:2f266d84d590a2358401af9f855a88b7d12cd13fff8e92832d98dbd3826a59c8

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