refactor(tests): route .muse/ paths through helpers in 10 more files
Fix perf_phase3, cmd_merge_dry_run, core_shallow, core_query_engine, cmd_workspace_hardening, cmd_symbolic_ref, cmd_reserve, query_stat_cache, cmd_clone_hardening, cmd_bundle_hardening. Rename self-shadowing locals (muse_dir, ref_path, heads_dir, remotes_dir, commits_dir) and fix script artifacts (loadmuse_dir, h_dir patterns).
sha256:d181910e755c6442c5a48412661023ba63c5b988338c06f8fd72f1d4caea04e4
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sha256:e2c199cedb0e8e17fed2fdab541c2d613de25691cb9229fa4bebe2c32cdb355d
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