chore(cli): remove apply command, move apply-patch to alphabetical position
Drop the apply subcommand from registration and imports. Move apply_patch.register between annotate and archive so the help output lists it in alphabetical order.
sha256:b64c78b4a37389c7cea283456e56988ff57ff18a89c61017f4af94486ac9b1a4
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sha256:8a0e4d60f3fb52e214b42679e4dd4346d19d9a66b472aec443143d0306312cd9
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