refactor: replace ID slices with short_id() and migrate rerere to harmony

- Replace all [:8]/[:12]/[:16] SHA-256 ID slice patterns with short_id() across all core, CLI, and plugin files (~111 files) - Fix 6 botched .short_id() method-call bugs introduced by over-eager replace_all (harmony.py lines 1152/1163/1172/1746, hub.py 5581/5613) - Add auto_apply() and record_resolutions() to harmony.py — port of the mechanical rerere integration functions using harmony storage - Add compute_semantic_fingerprint() to harmony.py — uses HarmonyPlugin protocol for domain-aware conflict fingerprinting - Rename RererePlugin -> HarmonyPlugin in domain.py and all callers - Rename --rerere-autoupdate -> --harmony-autoupdate in merge command - Remove rerere as a public API: delete muse/core/rerere.py, muse/cli/commands/rerere.py, tests/test_rerere.py, tests/test_cmd_rerere_hardening.py - Remove rerere subcommand registration from app.py - Update merge.py, commit.py, domain_info.py to use harmony equivalents - Update tests to reflect new flag names and capability key ('harmony')

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muse/cli/app.py::import::rereremuse/cli/commands/commit.py::import::rerere_record_resolutionsmuse/cli/commands/domain_info.py::import::RererePluginmuse/cli/commands/merge.py::import::rerere_auto_applymuse/cli/commands/rerere.py::import::ExitCodemuse/cli/commands/rerere.py::import::Manifestmuse/cli/commands/rerere.py::import::RerereRecordmuse/cli/commands/rerere.py::import::TYPE_CHECKINGmuse/cli/commands/rerere.py::import::TypedDictmuse/cli/commands/rerere.py::import::annotationsmuse/cli/commands/rerere.py::import::apply_cachedmuse/cli/commands/rerere.py::import::argparsemuse/cli/commands/rerere.py::import::clamp_intmuse/cli/commands/rerere.py::import::clear_allmuse/cli/commands/rerere.py::import::compute_fingerprintmuse/cli/commands/rerere.py::import::forget_recordmuse/cli/commands/rerere.py::import::gc_stalemuse/cli/commands/rerere.py::import::jsonmuse/cli/commands/rerere.py::import::list_recordsmuse/cli/commands/rerere.py::import::loggingmuse/cli/commands/rerere.py::import::pathlibmuse/cli/commands/rerere.py::import::read_commitmuse/cli/commands/rerere.py::import::read_domainmuse/cli/commands/rerere.py::import::read_merge_statemuse/cli/commands/rerere.py::import::read_snapshotmuse/cli/commands/rerere.py::import::record_preimagemuse/cli/commands/rerere.py::import::require_repomuse/cli/commands/rerere.py::import::resolve_pluginmuse/cli/commands/rerere.py::import::rr_cache_dirmuse/cli/commands/rerere.py::import::sanitize_displaymuse/cli/commands/rerere.py::import::sysmuse/cli/commands/rerere.py::loggermuse/cli/commands/rerere.py::registermuse/cli/commands/rerere.py::runmuse/cli/commands/rerere.py::run_clearmuse/cli/commands/rerere.py::run_forgetmuse/cli/commands/rerere.py::run_gcmuse/cli/commands/rerere.py::run_recordmuse/cli/commands/rerere.py::run_statusmuse/core/op_log.py::OpLogmuse/core/rerere.py::RerereMetaDictmuse/core/rerere.py::RerereRecordmuse/core/rerere.py::RerereRecord.has_resolutionmuse/core/rerere.py::apply_cachedmuse/core/rerere.py::auto_applymuse/core/rerere.py::clear_allmuse/core/rerere.py::compute_fingerprintmuse/core/rerere.py::conflict_fingerprintmuse/core/rerere.py::forget_recordmuse/core/rerere.py::gc_stalemuse/core/rerere.py::has_resolutionmuse/core/rerere.py::import::Manifestmuse/core/rerere.py::import::TYPE_CHECKINGmuse/core/rerere.py::import::TypedDictmuse/core/rerere.py::import::annotationsmuse/core/rerere.py::import::dataclassmuse/core/rerere.py::import::datetimemuse/core/rerere.py::import::hashlibmuse/core/rerere.py::import::jsonmuse/core/rerere.py::import::loggingmuse/core/rerere.py::import::osmuse/core/rerere.py::import::pathlibmuse/core/rerere.py::import::remuse/core/rerere.py::import::tempfilemuse/core/rerere.py::import::validate_object_idmuse/core/rerere.py::list_recordsmuse/core/rerere.py::load_recordmuse/core/rerere.py::loggermuse/core/rerere.py::record_preimagemuse/core/rerere.py::record_resolutionsmuse/core/rerere.py::rr_cache_dirmuse/core/rerere.py::save_resolutionmuse/core/transport.py::LocalFileTransportmuse/domain.py::RererePluginmuse/domain.py::RererePlugin.conflict_fingerprintmuse/plugins/code/_refactor_classify.py::RefactorClassification

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