gabriel / muse public
docs docs/track-snapshot-content-id-migration-plan #1 / 1
AI Agent gabriel · 9 days ago · Jul 7, 2026 · Diff

docs: architectural plan for unified-store snapshot-content-ID migration

Load-bearing, TDD, multi-phase implementation plan for the tool needed to fix the 2 commits found during musehub#134's investigation whose declared snapshot_id never matched their manifest since creation (2026-05-27).

Records why muse code migrate was investigated and ruled out (its snapshot/commit ID recomputation only touches the legacy pre-unified-store layout; the current migrate() orchestrator passes snapshot_id through unchanged), and specs the three-phase replacement: detect-and-correct at the snapshot layer, cascade-and-resign at the commit layer, then reuse the existing generic ref/reflog rewrite passes unchanged.

No implementation yet -- this is the architectural record, written before any code, per explicit instruction.

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Semantic Changes 16 symbols
~ docs/issues/snapshot-content-id-migration-plan.md .md 16 symbols added
+ Unified-store snapshot-content-ID migration: recompute-and-cascade repair for commits whose declared snapshot_id never m section Unified-store snapshot-content-ID migration: recompute-and-cascade repair for commits whose declared snapshot_id never m L1–288
+ Acceptance criteria section Acceptance criteria L258–277
+ Architecture section Architecture L118–239
+ Phase 1 — migrate_snapshot_content_ids() (detection + correction, snapshot layer) section Phase 1 — migrate_snapshot_content_ids() (detection + correction, snapshot layer) L122–158
+ code variable variable code L127–133
+ Phase 2 — cascading commit rewrite + re-sign (commit layer) section Phase 2 — cascading commit rewrite + re-sign (commit layer) L158–191
+ Phase 3 — ref / reflog integration section Phase 3 — ref / reflog integration L191–206
+ Phase 4 — full dry-run against scratch copies section Phase 4 — full dry-run against scratch copies L206–221
+ Phase 5 — verify the corrected scratch copy round-trips cleanly section Phase 5 — verify the corrected scratch copy round-trips cleanly L221–231
+ Phase 6 — staging cutover section Phase 6 — staging cutover L231–239
+ Background section Background L11–70
+ Non-negotiable invariants section Non-negotiable invariants L87–118
+ Open questions to resolve before implementation starts section Open questions to resolve before implementation starts L239–258
+ Out of scope section Out of scope L277–288
+ Status: architectural intention, not yet implemented section Status: architectural intention, not yet implemented L3–11
+ Why this must be TDD and why it's load-bearing section Why this must be TDD and why it's load-bearing L70–87
Files Changed
+1130
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+ .coverage .coverage
+ .museattributes .museattributes
+ .museignore .museignore
+ CLAUDE.md .md
+ LICENSE
+ README.md .md
+ dev-setup.sh .sh
+ docs/agent-guide.md .md
+ docs/agent-provenance.md .md
+ docs/guide/plugin-authoring-guide.md .md
+ docs/issues/derive-semver-tag-from-pep440-version.md .md
+ docs/issues/mist-read-owner-id-wrong-api-path.md .md
+ docs/issues/mwp-5-clone-retry-503.md .md
+ docs/issues/mwp-7-sibling-negotiation.md .md
+ docs/issues/mwp-mvp-master.md .md
+ docs/issues/mwp-spot-check.md .md
+ docs/issues/push-have-negotiation.md .md
+ docs/issues/push-refspec-syntax.md .md
+ docs/issues/reflog-complete.md .md
+ docs/issues/reflog-followup.md .md
+ docs/issues/reflog-long-ids.md .md
+ docs/issues/shelf-created-by-identity.md .md
+ docs/issues/shelf-read-ux-and-bug-fixes.md .md
+ docs/issues/snapshot-content-id-migration-plan.md .md
+ docs/issues/supported-commands-autoderive-plan.md .md
+ docs/issues/symlog-filename-too-long.md .md
+ docs/issues/symlog-followup.md .md
+ docs/issues/symlog.md .md
+ docs/issues/version-tags-followup.md .md
+ docs/issues/version-tags.md .md
+ docs/mists/muse-tag-guide.md .md
+ docs/reference/archive.md .md
+ docs/reference/auth.md .md
+ docs/reference/bisect.md .md
+ docs/reference/blame.md .md
+ docs/reference/code-domain.md .md
+ docs/reference/hub.md .md
+ docs/reference/midi-domain.md .md
+ docs/reference/muse-attributes.md .md
+ docs/reference/museignore.md .md
+ docs/reference/omzsh-plugin.md .md
+ docs/reference/plumbing.md .md
+ docs/reference/porcelain.md .md
+ docs/reference/reflog.md .md
+ docs/reference/remotes.md .md
+ docs/reference/type-contracts.md .md
+ docs/reference/workspace.md .md
+ docs/reference/worktree.md .md
+ muse/__init__.py .py
+ muse/_version.py .py
+ muse/cli/__init__.py .py
+ muse/cli/app.py .py
+ muse/cli/commands/__init__.py .py
+ muse/cli/commands/age.py .py
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+ muse/cli/commands/harmony/_shapes.py .py
+ muse/cli/commands/hash_object.py .py
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+ muse/cli/commands/merge_base.py .py
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+ muse/cli/commands/midi_query.py .py
+ muse/cli/commands/midi_shard.py .py
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+ muse/cli/commands/migrate_cmd.py .py
+ muse/cli/commands/mist.py .py
+ muse/cli/commands/mix.py .py
+ muse/cli/commands/motif_detect.py .py
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+ muse/cli/commands/name_rev.py .py
+ muse/cli/commands/narrative.py .py
+ muse/cli/commands/note_blame.py .py
+ muse/cli/commands/note_hotspots.py .py
+ muse/cli/commands/note_log.py .py
+ muse/cli/commands/notes.py .py
+ muse/cli/commands/pack_objects.py .py
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+ muse/cli/commands/patch_id.py .py
+ muse/cli/commands/path_cmd.py .py
+ muse/cli/commands/piano_roll.py .py
+ muse/cli/commands/plan_merge.py .py
+ muse/cli/commands/predict.py .py
+ muse/cli/commands/prune.py .py
+ muse/cli/commands/pull.py .py
+ muse/cli/commands/push.py .py
+ muse/cli/commands/quantize.py .py
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+ muse/cli/commands/query_history.py .py
+ muse/cli/commands/range_diff.py .py
+ muse/cli/commands/read.py .py
+ muse/cli/commands/read_commit.py .py
+ muse/cli/commands/read_snapshot.py .py
+ muse/cli/commands/rebase.py .py
+ muse/cli/commands/reconcile.py .py
+ muse/cli/commands/reflog.py .py
+ muse/cli/commands/release.py .py
+ muse/cli/commands/release_coord.py .py
+ muse/cli/commands/remote.py .py
+ muse/cli/commands/rename.py .py
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+ muse/core/blame.py .py
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+ muse/core/bridge/exporter.py .py
+ muse/core/bridge/git_primitives.py .py
+ muse/core/bridge/harmony_shelf.py .py
+ muse/core/bridge/hooks.py .py
+ muse/core/bridge/importer.py .py
+ muse/core/bridge/state.py .py
+ muse/core/bridge/status.py .py
+ muse/core/cache_base.py .py
+ muse/core/callgraph_cache.py .py
+ muse/core/ci.py .py
+ muse/core/cohen_transform.py .py
+ muse/core/commits.py .py
+ muse/core/compression.py .py
+ muse/core/coord_bus.py .py
+ muse/core/coordination.py .py
+ muse/core/crdts/__init__.py .py
+ muse/core/crdts/aw_map.py .py
+ muse/core/crdts/g_counter.py .py
+ muse/core/crdts/lww_register.py .py
+ muse/core/crdts/or_set.py .py
+ muse/core/crdts/rga.py .py
+ muse/core/crdts/vclock.py .py
+ muse/core/dag.py .py
+ muse/core/describe.py .py
+ muse/core/diff_algorithms/__init__.py .py
+ muse/core/diff_algorithms/lcs.py .py
+ muse/core/diff_algorithms/numerical.py .py
+ muse/core/diff_algorithms/set_ops.py .py
+ muse/core/diff_algorithms/tree_edit.py .py
+ muse/core/doc_extractor.py .py
+ muse/core/doc_history.py .py
+ muse/core/doc_renderer.py .py
+ muse/core/domain_migration.py .py
+ muse/core/envelope.py .py
+ muse/core/errors.py .py
+ muse/core/gc.py .py
+ muse/core/graph.py .py
+ muse/core/harmony/__init__.py .py
+ muse/core/harmony/audit.py .py
+ muse/core/harmony/engine.py .py
+ muse/core/harmony/escalations.py .py
+ muse/core/harmony/fingerprint.py .py
+ muse/core/harmony/paths.py .py
+ muse/core/harmony/patterns.py .py
+ muse/core/harmony/policies.py .py
+ muse/core/harmony/resolutions.py .py
+ muse/core/harmony/types.py .py
+ muse/core/hdkeys.py .py
+ muse/core/hub_trust.py .py
+ muse/core/identity.py .py
+ muse/core/ids.py .py
+ muse/core/ignore.py .py
+ muse/core/implicit_edge_cache.py .py
+ muse/core/indices.py .py
+ muse/core/invariants.py .py
+ muse/core/io.py .py
+ muse/core/keychain.py .py
+ muse/core/keypair.py .py
+ muse/core/merge_debug.py .py
+ muse/core/merge_engine.py .py
+ muse/core/migrate.py .py
+ muse/core/mpack.py .py
+ muse/core/msign.py .py
+ muse/core/object_availability.py .py
+ muse/core/object_store.py .py
+ muse/core/op_log.py .py
+ muse/core/op_merge.py .py
+ muse/core/pack_store.py .py
+ muse/core/patch_record.py .py
+ muse/core/paths.py .py
+ muse/core/plugins/__init__.py .py
+ muse/core/plugins/code_harmony.py .py
+ muse/core/provenance.py .py
+ muse/core/query_engine.py .py
+ muse/core/rebase.py .py
+ muse/core/record_helpers.py .py
+ muse/core/reflog.py .py
+ muse/core/refs.py .py
+ muse/core/releases.py .py
+ muse/core/repo.py .py
+ muse/core/schema.py .py
+ muse/core/secp256k1_sign.py .py
+ muse/core/semver.py .py
+ muse/core/semver_classifier.py .py
+ muse/core/shallow.py .py
+ muse/core/shelf.py .py
+ muse/core/slip010.py .py
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+ muse/core/stat_cache.py .py
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+ muse/core/symlog.py .py
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+ muse/core/test_runner.py .py
+ muse/core/test_selection.py .py
+ muse/core/timing.py .py
+ muse/core/transport.py .py
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+ muse/core/validation.py .py
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+ muse/core/workdir.py .py
+ muse/core/workspace.py .py
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+ muse/core/xml_safe.py .py
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+ muse/plugins/code/_code_query.py .py
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+ muse/plugins/code/ast_parser.py .py
+ muse/plugins/code/manifest.py .py
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+ muse/plugins/code/release_analysis.py .py
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+ muse/plugins/identity/dag.py .py
+ muse/plugins/identity/plugin.py .py
+ muse/plugins/identity/records.py .py
+ muse/plugins/midi/__init__.py .py
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+ muse/plugins/midi/_crdt_notes.py .py
+ muse/plugins/midi/_invariants.py .py
+ muse/plugins/midi/_midi_keys.py .py
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+ muse/plugins/midi/entity.py .py
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+ muse/plugins/midi/plugin.py .py
+ muse/plugins/mist/__init__.py .py
+ muse/plugins/mist/plugin.py .py
+ muse/plugins/registry.py .py
+ muse/plugins/scaffold/__init__.py .py
+ muse/plugins/scaffold/plugin.py .py
+ muse/plugins/social/__init__.py .py
+ muse/plugins/social/plugin.py .py
+ pyproject.toml .toml
+ scripts/muse-git-backup.sh .sh
+ tests/__init__.py .py
+ tests/cli_test_helper.py .py
+ tests/conftest.py .py
+ tests/fixtures/create_wire_test_repo.sh .sh
+ tests/test_addressed_merge_plugin.py .py
+ tests/test_age_envelope.py .py
+ tests/test_age_supercharge.py .py
+ tests/test_agent_config_envelope.py .py
+ tests/test_agent_envelope.py .py
+ tests/test_agent_json_schema.py .py
+ tests/test_agent_key_fd.py .py
+ tests/test_agent_key_fd_zeroing.py .py
+ tests/test_agent_map_envelope.py .py
+ tests/test_agent_seed_zeroing.py .py
+ tests/test_agent_signing.py .py
+ tests/test_agent_sub_seed_zeroing.py .py
+ tests/test_agent_supercharge.py .py
+ tests/test_algo_prefix_globs.py .py
+ tests/test_annotate_command.py .py
+ tests/test_annotate_envelope.py .py
+ tests/test_anon_commit_bug.py .py
+ tests/test_api_surface.py .py
+ tests/test_api_surface_envelope.py .py
+ tests/test_api_surface_supercharge.py .py
+ tests/test_app.py .py
+ tests/test_apply_archive_envelope.py .py
+ tests/test_apply_mpack_pack_store.py .py
+ tests/test_apply_mpack_partial_failure.py .py
+ tests/test_apply_pack_oserror_integrity.py .py
+ tests/test_archive_command.py .py
+ tests/test_attributes_auth_envelope.py .py
+ tests/test_auth_hd_persistence.py .py
+ tests/test_auth_keygen_mnemonic_guard.py .py
+ tests/test_auth_logout_keygen_integrity.py .py
+ tests/test_auth_mnemonic_display.py .py
+ tests/test_auth_mnemonic_input.py .py
+ tests/test_auth_register_integrity.py .py
+ tests/test_auth_rotate.py .py
+ tests/test_auth_show_migrate.py .py
+ tests/test_auth_supercharge.py .py
+ tests/test_bare_hex_rejection.py .py
+ tests/test_bip39_passphrase.py .py
+ tests/test_bisect.py .py
+ tests/test_bisect_envelope.py .py
+ tests/test_blame_envelope.py .py
+ tests/test_blame_supercharge.py .py
+ tests/test_blast_risk_envelope.py .py
+ tests/test_blast_risk_supercharge.py .py
+ tests/test_branch_delete_config_cleanup.py .py
+ tests/test_branch_intent_created_by.py .py
+ tests/test_branch_json_schema.py .py
+ tests/test_branch_merged_commit_id.py .py
+ tests/test_branch_supercharge.py .py
+ tests/test_breakage_envelope.py .py
+ tests/test_breakage_supercharge.py .py
+ tests/test_bridge_git_export.py .py
+ tests/test_bridge_git_import.py .py
+ tests/test_bridge_git_status.py .py
+ tests/test_bridge_harmony_shelf.py .py
+ tests/test_bridge_hooks.py .py
+ tests/test_bridge_phase1.py .py
+ tests/test_bridge_roundtrip.py .py
+ tests/test_bridge_security.py .py
+ tests/test_bridge_watch.py .py
+ tests/test_bundle_envelope.py .py
+ tests/test_bundle_object_compression.py .py
+ tests/test_bundle_reachable_from.py .py
+ tests/test_bundle_supercharge.py .py
+ tests/test_cache_base.py .py
+ tests/test_callgraph.py .py
+ tests/test_callgraph_cache.py .py
+ tests/test_cat_envelope.py .py
+ tests/test_cat_object_envelope.py .py
+ tests/test_cat_supercharge.py .py
+ tests/test_check_envelope.py .py
+ tests/test_checkout_envelope.py .py
+ tests/test_checkout_integrity.py .py
+ tests/test_checkout_symbol_envelope.py .py
+ tests/test_checkout_symbol_supercharge.py .py
+ tests/test_cherry_pick_envelope.py .py
+ tests/test_clean_envelope.py .py
+ tests/test_cli_auth.py .py
+ tests/test_cli_clone.py .py
+ tests/test_cli_coverage_gaps.py .py
+ tests/test_cli_hub.py .py
+ tests/test_cli_inspect.py .py
+ tests/test_cli_log.py .py
+ tests/test_cli_new_commands.py .py
+ tests/test_cli_plugin_dispatch.py .py
+ tests/test_cli_remote.py .py
+ tests/test_cli_reset_revert.py .py
+ tests/test_cli_show.py .py
+ tests/test_cli_workflow.py .py
+ tests/test_clone_envelope.py .py
+ tests/test_clone_partial.py .py
+ tests/test_clone_shallow.py .py
+ tests/test_clones_envelope.py .py
+ tests/test_clones_supercharge.py .py
+ tests/test_cmd_agent.py .py
+ tests/test_cmd_agent_config.py .py
+ tests/test_cmd_annotate_hardening.py .py
+ tests/test_cmd_apply.py .py
+ tests/test_cmd_apply_patch.py .py
+ tests/test_cmd_archive.py .py
+ tests/test_cmd_archive_hardening.py .py
+ tests/test_cmd_attributes_hardening.py .py
+ tests/test_cmd_auth_hardening.py .py
+ tests/test_cmd_auth_keygen_hd.py .py
+ tests/test_cmd_auth_keygen_register.py .py
+ tests/test_cmd_auth_phase5.py .py
+ tests/test_cmd_auth_phase8.py .py
+ tests/test_cmd_bisect.py .py
+ tests/test_cmd_bisect_hardening.py .py
+ tests/test_cmd_blame.py .py
+ tests/test_cmd_blame_hardening.py .py
+ tests/test_cmd_branch.py .py
+ tests/test_cmd_breakage.py .py
+ tests/test_cmd_bundle.py .py
+ tests/test_cmd_bundle_hardening.py .py
+ tests/test_cmd_cat.py .py
+ tests/test_cmd_cat_object.py .py
+ tests/test_cmd_check.py .py
+ tests/test_cmd_check_attr.py .py
+ tests/test_cmd_check_ignore.py .py
+ tests/test_cmd_check_ref_format.py .py
+ tests/test_cmd_checkout.py .py
+ tests/test_cmd_checkout_symbol.py .py
+ tests/test_cmd_cherry_pick.py .py
+ tests/test_cmd_cherry_pick_hardening.py .py
+ tests/test_cmd_clean.py .py
+ tests/test_cmd_clean_hardening.py .py
+ tests/test_cmd_clone_hardening.py .py
+ tests/test_cmd_clones.py .py
+ tests/test_cmd_code_add.py .py
+ tests/test_cmd_code_check.py .py
+ tests/test_cmd_code_query.py .py
+ tests/test_cmd_code_reset.py .py
+ tests/test_cmd_codemap.py .py
+ tests/test_cmd_commit.py .py
+ tests/test_cmd_commit_graph.py .py
+ tests/test_cmd_commit_graph_enhancements.py .py
+ tests/test_cmd_commit_symlog.py .py
+ tests/test_cmd_commit_tree.py .py
+ tests/test_cmd_config.py .py
+ tests/test_cmd_config_hardening.py .py
+ tests/test_cmd_conflicts.py .py
+ tests/test_cmd_content_grep.py .py
+ tests/test_cmd_content_grep_hardening.py .py
+ tests/test_cmd_coord_gc.py .py
+ tests/test_cmd_coord_lifecycle.py .py
+ tests/test_cmd_coord_list.py .py
+ tests/test_cmd_coord_sync.py .py
+ tests/test_cmd_core_cat.py .py
+ tests/test_cmd_count_objects.py .py
+ tests/test_cmd_dag.py .py
+ tests/test_cmd_dead.py .py
+ tests/test_cmd_describe.py .py
+ tests/test_cmd_describe_hardening.py .py
+ tests/test_cmd_describe_version_tags.py .py
+ tests/test_cmd_diff.py .py
+ tests/test_cmd_diff_hardening.py .py
+ tests/test_cmd_docs.py .py
+ tests/test_cmd_domain_info.py .py
+ tests/test_cmd_domain_info_hardening.py .py
+ tests/test_cmd_domains_hardening.py .py
+ tests/test_cmd_fetch_hardening.py .py
+ tests/test_cmd_find_symbol.py .py
+ tests/test_cmd_for_each_ref.py .py
+ tests/test_cmd_for_each_ref_hardening.py .py
+ tests/test_cmd_forecast.py .py
+ tests/test_cmd_format_patch.py .py
+ tests/test_cmd_gc.py .py
+ tests/test_cmd_gc_hardening.py .py
+ tests/test_cmd_gc_reflog.py .py
+ tests/test_cmd_grep.py .py
+ tests/test_cmd_hash_object.py .py
+ tests/test_cmd_heartbeat_coord.py .py
+ tests/test_cmd_hub_hardening.py .py
+ tests/test_cmd_index.py .py
+ tests/test_cmd_init.py .py
+ tests/test_cmd_integration.py .py
+ tests/test_cmd_intent.py .py
+ tests/test_cmd_invariants.py .py
+ tests/test_cmd_label.py .py
+ tests/test_cmd_log.py .py
+ tests/test_cmd_ls_files.py .py
+ tests/test_cmd_ls_remote.py .py
+ tests/test_cmd_ls_tree.py .py
+ tests/test_cmd_maintenance.py .py
+ tests/test_cmd_merge.py .py
+ tests/test_cmd_merge_base.py .py
+ tests/test_cmd_merge_base_and_snapshot_diff.py .py
+ tests/test_cmd_merge_dry_run.py .py
+ tests/test_cmd_merge_hardening.py .py
+ tests/test_cmd_merge_tree.py .py
+ tests/test_cmd_mv.py .py
+ tests/test_cmd_name_rev.py .py
+ tests/test_cmd_patch.py .py
+ tests/test_cmd_plan_merge.py .py
+ tests/test_cmd_pull_hardening.py .py
+ tests/test_cmd_push_hardening.py .py
+ tests/test_cmd_read_commit.py .py
+ tests/test_cmd_read_snapshot.py .py
+ tests/test_cmd_reconcile.py .py
+ tests/test_cmd_reflog.py .py
+ tests/test_cmd_reflog_coverage.py .py
+ tests/test_cmd_reflog_delete.py .py
+ tests/test_cmd_reflog_exists.py .py
+ tests/test_cmd_reflog_expire.py .py
+ tests/test_cmd_reflog_hardening.py .py
+ tests/test_cmd_release_coord.py .py
+ tests/test_cmd_release_hardening.py .py
+ tests/test_cmd_remaining.py .py
+ tests/test_cmd_remote_hardening.py .py
+ tests/test_cmd_reserve.py .py
+ tests/test_cmd_reset_hardening.py .py
+ tests/test_cmd_reset_revert.py .py
+ tests/test_cmd_restore.py .py
+ tests/test_cmd_rev_list.py .py
+ tests/test_cmd_rev_parse.py .py
+ tests/test_cmd_revert_hardening.py .py
+ tests/test_cmd_rm.py .py
+ tests/test_cmd_semantic_cherry_pick.py .py
+ tests/test_cmd_shard.py .py
+ tests/test_cmd_shelf.py .py
+ tests/test_cmd_shortlog.py .py
+ tests/test_cmd_shortlog_hardening.py .py
+ tests/test_cmd_show.py .py
+ tests/test_cmd_show_hardening.py .py
+ tests/test_cmd_show_ref.py .py
+ tests/test_cmd_show_ref_hardening.py .py
+ tests/test_cmd_sign.py .py
+ tests/test_cmd_sign_hardening.py .py
+ tests/test_cmd_sign_propose.py .py
+ tests/test_cmd_snapshot.py .py
+ tests/test_cmd_snapshot_diff.py .py
+ tests/test_cmd_snapshot_hardening.py .py
+ tests/test_cmd_sparse_checkout.py .py
+ tests/test_cmd_status.py .py
+ tests/test_cmd_stress.py .py
+ tests/test_cmd_switch.py .py
+ tests/test_cmd_symbolic_ref.py .py
+ tests/test_cmd_symlog_lifecycle.py .py
+ tests/test_cmd_symlog_read.py .py
+ tests/test_cmd_symlog_refs.py .py
+ tests/test_cmd_tag.py .py
+ tests/test_cmd_tag_hardening.py .py
+ tests/test_cmd_task_queue.py .py
+ tests/test_cmd_test.py .py
+ tests/test_cmd_trust_json.py .py
+ tests/test_cmd_type.py .py
+ tests/test_cmd_update_ref.py .py
+ tests/test_cmd_verify.py .py
+ tests/test_cmd_verify_commit.py .py
+ tests/test_cmd_verify_hardening.py .py
+ tests/test_cmd_verify_object.py .py
+ tests/test_cmd_verify_pack.py .py
+ tests/test_cmd_verify_shallow.py .py
+ tests/test_cmd_verify_tag.py .py
+ tests/test_cmd_version_tag_push.py .py
+ tests/test_cmd_version_tags.py .py
+ tests/test_cmd_watch_coord.py .py
+ tests/test_cmd_workspace_hardening.py .py
+ tests/test_cmd_worktree.py .py
+ tests/test_cmd_worktree_hardening.py .py
+ tests/test_code_add_resolves_conflicts.py .py
+ tests/test_code_add_supercharge.py .py
+ tests/test_code_check_envelope.py .py
+ tests/test_code_check_supercharge.py .py
+ tests/test_code_commands.py .py
+ tests/test_code_harmony_plugin.py .py
+ tests/test_code_invariants.py .py
+ tests/test_code_language_config.py .py
+ tests/test_code_manifest.py .py
+ tests/test_code_migrate.py .py
+ tests/test_code_plugin.py .py
+ tests/test_code_plugin_attributes.py .py
+ tests/test_code_query.py .py
+ tests/test_code_query_envelope.py .py
+ tests/test_code_query_supercharge.py .py
+ tests/test_code_reset_granular.py .py
+ tests/test_code_stage.py .py
+ tests/test_code_stage_envelope.py .py
+ tests/test_codemap_envelope.py .py
+ tests/test_codemap_supercharge.py .py
+ tests/test_commit_concurrent_ref_safety.py .py
+ tests/test_commit_dir_changes.py .py
+ tests/test_commit_envelope.py .py
+ tests/test_commit_from_dict_timestamp_loss.py .py
+ tests/test_commit_graph_envelope.py .py
+ tests/test_commit_json_schema.py .py
+ tests/test_commit_object_store_completeness.py .py
+ tests/test_commit_record_committed_at_corruption.py .py
+ tests/test_commit_record_schema.py .py
+ tests/test_commit_sign_config.py .py
+ tests/test_commit_tree_envelope.py .py
+ tests/test_commit_workdir_preservation.py .py
+ tests/test_compare_envelope.py .py
+ tests/test_compare_supercharge.py .py
+ tests/test_compression.py .py
+ tests/test_config_cmd_envelope.py .py
+ tests/test_conflicts_envelope.py .py
+ tests/test_content_grep_envelope.py .py
+ tests/test_contract_envelope.py .py
+ tests/test_contract_supercharge.py .py
+ tests/test_coord_data_integrity.py .py
+ tests/test_coord_gc_envelope.py .py
+ tests/test_coord_performance.py .py
+ tests/test_coord_pull_null_records.py .py
+ tests/test_coord_push_null_counts.py .py
+ tests/test_coord_security.py .py
+ tests/test_coord_sync_envelope.py .py
+ tests/test_coord_write_remote_atomic.py .py
+ tests/test_coordination.py .py
+ tests/test_core_agent_slots.py .py
+ tests/test_core_attributes.py .py
+ tests/test_core_bip39.py .py
+ tests/test_core_bisect.py .py
+ tests/test_core_blame.py .py
+ tests/test_core_blame_envelope.py .py
+ tests/test_core_cat_envelope.py .py
+ tests/test_core_ci.py .py
+ tests/test_core_cohen_transform.py .py
+ tests/test_core_coord_bus.py .py
+ tests/test_core_coverage_gaps.py .py
+ tests/test_core_doc_extractor.py .py
+ tests/test_core_doc_history.py .py
+ tests/test_core_doc_renderer.py .py
+ tests/test_core_gc.py .py
+ tests/test_core_graph.py .py
+ tests/test_core_hdkeys.py .py
+ tests/test_core_ignore.py .py
+ tests/test_core_invariants.py .py
+ tests/test_core_keychain.py .py
+ tests/test_core_merge_engine.py .py
+ tests/test_core_msign.py .py
+ tests/test_core_object_availability.py .py
+ tests/test_core_pack.py .py
+ tests/test_core_patch_record.py .py
+ tests/test_core_paths_init_repo_dirs.py .py
+ tests/test_core_provenance.py .py
+ tests/test_core_query_engine.py .py
+ tests/test_core_reflog.py .py
+ tests/test_core_refs.py .py
+ tests/test_core_repo.py .py
+ tests/test_core_shallow.py .py
+ tests/test_core_slip010.py .py
+ tests/test_core_snapshot.py .py
+ tests/test_core_stat_cache.py .py
+ tests/test_core_store.py .py
+ tests/test_core_symbol_cache.py .py
+ tests/test_core_symlog.py .py
+ tests/test_core_test_history.py .py
+ tests/test_core_test_runner.py .py
+ tests/test_core_test_selection.py .py
+ tests/test_core_transport.py .py
+ tests/test_core_type_analysis.py .py
+ tests/test_core_types.py .py
+ tests/test_core_validation.py .py
+ tests/test_core_version_tags.py .py
+ tests/test_core_workspace.py .py
+ tests/test_core_worktree.py .py
+ tests/test_core_xml_safe.py .py
+ tests/test_count_objects_envelope.py .py
+ tests/test_coupling_envelope.py .py
+ tests/test_coupling_supercharge.py .py
+ tests/test_coverage_envelope.py .py
+ tests/test_coverage_supercharge.py .py
+ tests/test_crdt.py .py
+ tests/test_crdts.py .py
+ tests/test_dag_envelope.py .py
+ tests/test_dead_envelope.py .py
+ tests/test_dead_supercharge.py .py
+ tests/test_deps_envelope.py .py
+ tests/test_deps_supercharge.py .py
+ tests/test_derived_key_zeroing.py .py
+ tests/test_describe_envelope.py .py
+ tests/test_describe_walk.py .py
+ tests/test_detect_refactor_envelope.py .py
+ tests/test_detect_refactor_supercharge.py .py
+ tests/test_diff_algorithms.py .py
+ tests/test_diff_dir_tracking.py .py
+ tests/test_diff_envelope.py .py
+ tests/test_diff_json_schema.py .py
+ tests/test_diff_staged_clean.py .py
+ tests/test_dir_lifecycle.py .py
+ tests/test_directories_feature.py .py
+ tests/test_directory_dimension.py .py
+ tests/test_directory_tracking.py .py
+ tests/test_docs_envelope.py .py
+ tests/test_docs_supercharge.py .py
+ tests/test_domain_command_registry.py .py
+ tests/test_domain_command_registry_wiring.py .py
+ tests/test_domain_info_envelope.py .py
+ tests/test_domain_schema.py .py
+ tests/test_domains_envelope.py .py
+ tests/test_domains_publish.py .py
+ tests/test_domains_publish_supported_commands.py .py
+ tests/test_entangle_envelope.py .py
+ tests/test_entangle_supercharge.py .py
+ tests/test_entity.py .py
+ tests/test_envelope.py .py
+ tests/test_errors_supercharge.py .py
+ tests/test_fd_guard.py .py
+ tests/test_fetch_envelope.py .py
+ tests/test_fetch_mpack_command_wiring.py .py
+ tests/test_file_rename_detection.py .py
+ tests/test_find_symbol_envelope.py .py
+ tests/test_find_symbol_supercharge.py .py
+ tests/test_for_each_ref_envelope.py .py
+ tests/test_force_track.py .py
+ tests/test_forecast_envelope.py .py
+ tests/test_format_patch_envelope.py .py
+ tests/test_format_patch_supercharge.py .py
+ tests/test_framework_plugins.py .py
+ tests/test_gc_corrupt_commit_object_retention.py .py
+ tests/test_gc_envelope.py .py
+ tests/test_gc_full.py .py
+ tests/test_gc_path_helpers_and_remote_refs.py .py
+ tests/test_gc_supercharge.py .py
+ tests/test_gravity_envelope.py .py
+ tests/test_gravity_supercharge.py .py
+ tests/test_grep_envelope.py .py
+ tests/test_grep_supercharge.py .py
+ tests/test_guard_supercharge.py .py
+ tests/test_harmony_cli.py .py
+ tests/test_harmony_cli_phase3.py .py
+ tests/test_harmony_cli_phase4.py .py
+ tests/test_harmony_comprehensive.py .py
+ tests/test_harmony_engine.py .py
+ tests/test_harmony_envelope.py .py
+ tests/test_harmony_integration.py .py
+ tests/test_harmony_phase1.py .py
+ tests/test_harmony_phase4.py .py
+ tests/test_hash_object_canonical.py .py
+ tests/test_hash_object_envelope.py .py
+ tests/test_hd_keygen_unified.py .py
+ tests/test_heartbeat_envelope.py .py
+ tests/test_hotspots_envelope.py .py
+ tests/test_hotspots_supercharge.py .py
+ tests/test_hub_api_ssl_and_public_access.py .py
+ tests/test_hub_body_file_assignee.py .py
+ tests/test_hub_list_envelopes.py .py
+ tests/test_identity_domain_diff.py .py
+ tests/test_identity_domain_merge.py .py
+ tests/test_identity_domain_records.py .py
+ tests/test_identity_domain_schema.py .py
+ tests/test_identity_domain_snapshot.py .py
+ tests/test_impact_supercharge.py .py
+ tests/test_implicit_edge_cache.py .py
+ tests/test_index_supercharge.py .py
+ tests/test_indices.py .py
+ tests/test_init_supercharge.py .py
+ tests/test_integrity_I10_bit_flip.py .py
+ tests/test_integrity_I1_read_verify.py .py
+ tests/test_integrity_I2_fsync.py .py
+ tests/test_integrity_I3_concurrent_race.py .py
+ tests/test_integrity_I4_msgpack_size.py .py
+ tests/test_integrity_I5_commit_integrity.py .py
+ tests/test_integrity_I6_snapshot_scale.py .py
+ tests/test_integrity_I7_history_walk.py .py
+ tests/test_integrity_I8_object_store_scale.py .py
+ tests/test_integrity_I9_sigkill.py .py
+ tests/test_invariant_file_cache.py .py
+ tests/test_invariants_supercharge.py .py
+ tests/test_keychain_isolation.py .py
+ tests/test_keygen_no_bytes_copy.py .py
+ tests/test_languages_supercharge.py .py
+ tests/test_lineage.py .py
+ tests/test_lineage_algorithm.py .py
+ tests/test_lineage_supercharge.py .py
+ tests/test_log_branch_flag.py .py
+ tests/test_log_collect_all_commits.py .py
+ tests/test_log_dotdot_range.py .py
+ tests/test_log_graph.py .py
+ tests/test_log_json_schema.py .py
+ tests/test_log_supercharge.py .py
+ tests/test_ls_files_supercharge.py .py
+ tests/test_ls_remote_supercharge.py .py
+ tests/test_ls_tree_supercharge.py .py
+ tests/test_maintenance_supercharge.py .py
+ tests/test_manifest.py .py
+ tests/test_markdown_adapter.py .py
+ tests/test_merge_base_supercharge.py .py
+ tests/test_merge_conflict_markers.py .py
+ tests/test_merge_data_integrity.py .py
+ tests/test_merge_supercharge.py .py
+ tests/test_merge_tree_supercharge.py .py
+ tests/test_midi_diff.py .py
+ tests/test_midi_plugin.py .py
+ tests/test_midi_semantic.py .py
+ tests/test_migrate_domain_integers.py .py
+ tests/test_migrate_force_resign.py .py
+ tests/test_migrate_object_store.py .py
+ tests/test_mist_cli.py .py
+ tests/test_mist_plugin.py .py
+ tests/test_mist_read_api_path.py .py
+ tests/test_mpack_bundle.py .py
+ tests/test_mpack_cmd_pack_unpack.py .py
+ tests/test_mpack_cmd_verify.py .py
+ tests/test_mpack_compression.py .py
+ tests/test_mpack_core.py .py
+ tests/test_mpack_delta_format.py .py
+ tests/test_mpack_oserror_integrity.py .py
+ tests/test_mpack_perf.py .py
+ tests/test_mpack_presign.py .py
+ tests/test_mpack_schema.py .py
+ tests/test_mpack_snapshot_integrity.py .py
+ tests/test_mpack_unpack_payload.py .py
+ tests/test_mpack_wire.py .py
+ tests/test_msign_dual_sig.py .py
+ tests/test_music_invariants.py .py
+ tests/test_music_midi_merge.py .py
+ tests/test_music_query.py .py
+ tests/test_mv_supercharge.py .py
+ tests/test_mwp5_clone_retry.py .py
+ tests/test_mwp7_sibling_negotiation.py .py
+ tests/test_name_rev_supercharge.py .py
+ tests/test_narrative_supercharge.py .py
+ tests/test_object_store_algo_layout.py .py
+ tests/test_object_store_write_taxonomy.py .py
+ tests/test_op_log.py .py
+ tests/test_op_merge.py .py
+ tests/test_pack_missing_snapshot_integrity.py .py
+ tests/test_pack_objects_supercharge.py .py
+ tests/test_pack_store.py .py
+ tests/test_passphrase_env_warn.py .py
+ tests/test_passphrase_secure.py .py
+ tests/test_patch_id_supercharge.py .py
+ tests/test_patch_supercharge.py .py
+ tests/test_perf_diff_scale.py .py
+ tests/test_perf_extreme_code_porcelain.py .py
+ tests/test_perf_merge_scale.py .py
+ tests/test_perf_phase3.py .py
+ tests/test_phantom_conflicts.py .py
+ tests/test_phase1_cas_branch_ref_callers.py .py
+ tests/test_phase1_cohen_action_labels.py .py
+ tests/test_phase1_merge_engine.py .py
+ tests/test_phase1_naming.py .py
+ tests/test_phase2_bfs_migration.py .py
+ tests/test_phase2_conflict_granularity.py .py
+ tests/test_phase2_legacy_store_migration.py .py
+ tests/test_phase2_or_set_symbol_independence.py .py
+ tests/test_phase2_parent_existence.py .py
+ tests/test_phase2b_missed_bfs_sites.py .py
+ tests/test_phase3_merge_state_ordering.py .py
+ tests/test_phase3_noncmt_bfs_migration.py .py
+ tests/test_phase3_strategy_matrix.py .py
+ tests/test_phase3_tags_releases_json.py .py
+ tests/test_phase3_weave_union_docs.py .py
+ tests/test_phase4_harmony_history.py .py
+ tests/test_phase4_shelf_json.py .py
+ tests/test_phase5_phantom_guard.py .py
+ tests/test_phase5_stage_index_json.py .py
+ tests/test_phase5_stage_preserved_on_failure.py .py
+ tests/test_phase5_store_linear_walks.py .py
+ tests/test_phase6_caches_indices_json.py .py
+ tests/test_phase6_checkout_interruption.py .py
+ tests/test_phase6_unified_merge_engine.py .py
+ tests/test_phase7_bundle_atomicity.py .py
+ tests/test_phase7_merge_correctness.py .py
+ tests/test_phase7_no_msgpack_in_storage.py .py
+ tests/test_phase8_explain.py .py
+ tests/test_plugin_apply_and_checkout.py .py
+ tests/test_plugin_registry.py .py
+ tests/test_porcelain_security.py .py
+ tests/test_predicate.py .py
+ tests/test_predict_supercharge.py .py
+ tests/test_property_based.py .py
+ tests/test_property_merge_invariants.py .py
+ tests/test_protected_branch_writes.py .py
+ tests/test_protected_branches.py .py
+ tests/test_provenance.py .py
+ tests/test_prune_supercharge.py .py
+ tests/test_public_key_fingerprint.py .py
+ tests/test_pull_missing_snapshot_guard.py .py
+ tests/test_push_branch_have.py .py
+ tests/test_push_cli_flags.py .py
+ tests/test_push_force_flag.py .py
+ tests/test_push_have_filter.py .py
+ tests/test_push_mpack_build.py .py
+ tests/test_push_mpack_e2e.py .py
+ tests/test_push_object_delta.py .py
+ tests/test_push_repo_not_found.py .py
+ tests/test_push_snapshot_loading.py .py
+ tests/test_push_step1_dag_walk.py .py
+ tests/test_query_history_supercharge.py .py
+ tests/test_query_stat_cache.py .py
+ tests/test_query_supercharge.py .py
+ tests/test_range_diff_supercharge.py .py
+ tests/test_read_color.py .py
+ tests/test_read_commit_supercharge.py .py
+ tests/test_read_granular_stat.py .py
+ tests/test_read_snapshot_supercharge.py .py
+ tests/test_rebase_missing_snapshot_guard.py .py
+ tests/test_rebase_supercharge.py .py
+ tests/test_refactor_classify.py .py
+ tests/test_reflog_ref_resolution.py .py
+ tests/test_reflog_supercharge.py .py
+ tests/test_release.py .py
+ tests/test_release_analysis.py .py
+ tests/test_release_supercharge.py .py
+ tests/test_remote_supercharge.py .py
+ tests/test_remote_tracking_refs.py .py
+ tests/test_rename_op.py .py
+ tests/test_rename_supercharge.py .py
+ tests/test_reset_supercharge.py .py
+ tests/test_resolve_phase1.py .py
+ tests/test_resolve_phase3.py .py
+ tests/test_resolve_phase4.py .py
+ tests/test_resolve_phase5.py .py
+ tests/test_resolve_signing_identity_keychain_path.py .py
+ tests/test_restore_supercharge.py .py
+ tests/test_run_push_json_multi_object.py .py
+ tests/test_scaffold_plugin.py .py
+ tests/test_schema_supercharge.py .py
+ tests/test_secp256k1_sign.py .py
+ tests/test_security_agent_impersonation.py .py
+ tests/test_security_ast_dos.py .py
+ tests/test_security_branch_ref_injection.py .py
+ tests/test_security_code_porcelain.py .py
+ tests/test_security_credential_leakage.py .py
+ tests/test_security_env_injection.py .py
+ tests/test_security_hub_trust.py .py
+ tests/test_security_msgpack_hardening.py .py
+ tests/test_security_no_pem_on_disk.py .py
+ tests/test_security_object_store_poisoning.py .py
+ tests/test_security_ownership.py .py
+ tests/test_security_path_traversal.py .py
+ tests/test_security_symlink.py .py
+ tests/test_security_test_runner.py .py
+ tests/test_security_zeroing.py .py
+ tests/test_seed_zeroing.py .py
+ tests/test_sem_ver.py .py
+ tests/test_semantic_cherry_pick_supercharge.py .py
+ tests/test_semantic_test_coverage_supercharge.py .py
+ tests/test_shelf_msgpack_storage.py .py
+ tests/test_show_json_schema.py .py
+ tests/test_snapshot_delta.py .py
+ tests/test_snapshot_diff_supercharge.py .py
+ tests/test_snapshot_schema_version_and_compression.py .py
+ tests/test_snapshot_supercharge.py .py
+ tests/test_social_cli.py .py
+ tests/test_social_plugin.py .py
+ tests/test_sparse_checkout_supercharge.py .py
+ tests/test_stable_supercharge.py .py
+ tests/test_status_directory_tracking.py .py
+ tests/test_status_json_schema.py .py
+ tests/test_status_rename_detection.py .py
+ tests/test_status_staged_labels.py .py
+ tests/test_status_supercharge.py .py
+ tests/test_status_untracked_labels.py .py
+ tests/test_store_branch_heads.py .py
+ tests/test_store_fsync_enospc.py .py
+ tests/test_stress_code_analytics.py .py
+ tests/test_stress_crdts_exhaustive.py .py
+ tests/test_stress_diff_algorithms.py .py
+ tests/test_stress_domains_publish.py .py
+ tests/test_stress_e2e_workflow.py .py
+ tests/test_stress_graph.py .py
+ tests/test_stress_merge_correctness.py .py
+ tests/test_stress_merge_regression.py .py
+ tests/test_stress_midi_all_dims.py .py
+ tests/test_stress_object_store.py .py
+ tests/test_stress_query_engine.py .py
+ tests/test_stress_store_provenance.py .py
+ tests/test_structured_delta.py .py
+ tests/test_switch_supercharge.py .py
+ tests/test_symbol_log_supercharge.py .py
+ tests/test_symbolic_ref_supercharge.py .py
+ tests/test_symbols_supercharge.py .py
+ tests/test_tag_supercharge.py .py
+ tests/test_terminal_supercharge.py .py
+ tests/test_test_cmd_supercharge.py .py
+ tests/test_test_selection_speedup.py .py
+ tests/test_toml_adapter.py .py
+ tests/test_transport_fetch_phase2.py .py
+ tests/test_transport_hub_json.py .py
+ tests/test_transport_push_mpack_presign.py .py
+ tests/test_transport_push_mpack_put.py .py
+ tests/test_transport_push_mpack_put_timeout.py .py
+ tests/test_transport_push_mpack_unpack.py .py
+ tests/test_transport_snapshot_directories_dropped.py .py
+ tests/test_trust_supercharge.py .py
+ tests/test_type_cmd_supercharge.py .py
+ tests/test_typing_audit.py .py
+ tests/test_unified_object_store.py .py
+ tests/test_unpack_objects_supercharge.py .py
+ tests/test_update_ref_supercharge.py .py
+ tests/test_user_identity_migration.py .py
+ tests/test_velocity_supercharge.py .py
+ tests/test_verify_extended.py .py
+ tests/test_verify_supercharge.py .py
+ tests/test_verify_tag_supercharge.py .py
+ tests/test_walk_dag.py .py
+ tests/test_wire_localhost.py .py
+ tests/test_wire_step2a_pack.py .py
+ tests/test_workdir_integrity.py .py
+ tests/test_workspace_supercharge.py .py
+ tests/test_worktree_supercharge.py .py
+ tests/test_write_commit_snapshot_hash_verify.py .py
+ tests/test_write_snapshot_incoming_verify.py .py
+ tools/README.md .md
+ tools/add_json_alias.py .py
+ tools/demo.py .py
+ tools/gen_type_contracts.py .py
+ tools/install-omzsh-plugin.sh .sh
+ tools/render_domain_registry.py .py
+ tools/render_html.py .py
+ tools/render_midi_demo.py .py
+ tools/revert_json_alias.py .py
+ tools/typing_audit.py .py
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