fix: exclude nested muse repos from workdir walk
All os.walk loops in snapshot.py, code plugin snapshot/live_snapshot, content_grep, and code_stage now prune any subdirectory that contains a .muse/ dir. Nested repos are independent version-controlled units — their files belong to their own snapshot, not the parent repo's.
Fixes the workspace root committing all member repo files (3760 files) instead of only its own artifacts.
sha256:1828d307f16c680001da5534f6eeb3f35b3d82a5eecc0279a0c44319c2a79ec0
sha
sha256:4b26e3988d66b424bfd532b5ea6092a7bc85d6f84ff524e50fb2934a8febfa52
snapshot
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